#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 37:63:73:81:108:108:117:117:128:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.65211923906249
H1_P_Y = 45.19265444423988
H1_P_Z = 9.208441735326621
# Orientation:
H1_DX_X = -0.14807488475439357
H1_DX_Y = 0.7970161403936444
H1_DX_Z = 0.5855246369342471
H1_DY_X = -0.9369090971349863
H1_DY_Y = 0.076519294970538
H1_DY_Z = -0.34109550158705026
H1_DZ_X = -0.3166625525866351
H1_DZ_Y = -0.5990910360280992
H1_DZ_Z = 0.7354010867139724
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.6446528537456
H2_P_Y = 70.84204214511722
H2_P_Z = -0.24814460093998436
# Orientation:
H2_DX_X = 0.8233511987438931
H2_DX_Y = -0.42494473108708064
H2_DX_Z = 0.37618450133988135
H2_DY_X = 0.37460764375848044
H2_DY_Y = -0.09100958844976503
H2_DY_Z = -0.9227060030410034
H2_DZ_X = 0.4263354509828048
H2_DZ_Y = 0.9006326833573866
H2_DZ_Z = 0.08425469069282066
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.33385245427868
H3_P_Y = 50.260995001876964
H3_P_Z = -6.621074658717642
# Orientation:
H3_DX_X = 0.5957832420503735
H3_DX_Y = 0.4738184635996703
H3_DX_Z = -0.6484893152889848
H3_DY_X = -0.2309649986943043
H3_DY_Y = -0.6722509532411252
H3_DY_Z = -0.7033731763754876
H3_DZ_X = -0.769218758137157
H3_DZ_Y = 0.5688362852512654
H3_DZ_Z = -0.2910803715668244
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.2833364023342
H4_P_Y = 38.29650451206821
H4_P_Z = -1.9464383547794015
# Orientation:
H4_DX_X = 0.4196449373242217
H4_DX_Y = 0.6808944019847729
H4_DX_Z = 0.6002340709456018
H4_DY_X = -0.6376750514449157
H4_DY_Y = -0.249452978681731
H4_DY_Z = 0.7287960895830332
H4_DZ_X = 0.6459633544891119
H4_DZ_Y = -0.6885898814044609
H4_DZ_Z = 0.329507693209965
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.28392760343687
H5_P_Y = 56.05041618187687
H5_P_Z = 11.42390652320816
# Orientation:
H5_DX_X = -0.4139328522969379
H5_DX_Y = 0.5598217737745657
H5_DX_Z = 0.7178155580629557
H5_DY_X = 0.25465619878809775
H5_DY_Y = -0.6858455411742455
H5_DY_Z = 0.6817375697951498
H5_DZ_X = 0.8739621354544624
H5_DZ_Y = 0.46498975823053
H5_DZ_Z = 0.1413319161851554
#############  END of Description of junction: j1