Jmol
Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
loading... j2s/core/package.js
loading... j2s/core/core.z.js -- required by ClazzNode
loading... j2s/java/io/FileOutputStream.js
Jmol JavaScript applet jmolApplet0__2612702679726944__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__2612702679726944__)
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://www-ccrnp.ncifcrf.gov/rnajunction/useJmol.php?jid=12074","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__2612702679726944__","codePath":"https://www-ccrnp.ncifcrf.gov/rnajunction/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"2612702679726944","bgcolor":"#FFFFFF" }
setting document base to "https://www-ccrnp.ncifcrf.gov/rnajunction/useJmol.php?jid=12074"
(C) 2012 Jmol Development
Jmol Version: 14.2.2_2014.06.29 2014-06-28 18:17
java.vendor: Java2Script (HTML5)
java.version: JSmol 14.1.14 Apr 27, 2014
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__2612702679726944__ ready
loading... j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(files/database/junctions/2J03.rnaview.pdb_j2_A-C998_A-G1154.pdb)
FileManager opening 1 https://www-ccrnp.ncifcrf.gov/rnajunction/files/database/junctions/2J03.rnaview.pdb_j2_A-C998_A-G1154.pdb
The Resolver thinks Pdb
loading... j2s/core/corebio.z.js
loading... j2s/J/render/MeshRenderer.js -- required by J.renderbio.BioShapeRenderer
loading... j2s/J/shape/Mesh.js
Time for openFile(files/database/junctions/2J03.rnaview.pdb_j2_A-C998_A-G1154.pdb): 276 ms
reading 365 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
365 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
365 atoms selected
20 atoms selected
Script completed
Jmol script terminated
loading... j2s/J/g3d/HermiteRenderer.js