RNAJunction Database - Junction Profile:11772
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 11772: 2IXY_j2_A-C4_A-G22

Primary Citation: (from PDB entry 2IXY)

S.FLODELL M.PETERSEN F.GIRARD J.ZDUNEK K.KIDD-LJUNGGREN J.SCHLEUCHER S.S.WIJMENGA SOLUTION STRUCTURE OF THE APICAL STEM-LOOP OF THE HUMAN HEPATITIS B VIRUS ENCAPSIDATION SIGNAL. NUCLEIC ACIDS RES. V. 34 4449 2006

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:2IXY j2 A-C4 A-G22 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 166°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.74232Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GGGUGGC 7nt

Strand 2: Chain A: GCCUCC 6nt

Valid XHTML 1.0 Transitional