RNAJunction Database - Junction Profile:156
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 156: 1CSL_j2_A-G47_B-G71

Primary Citation: (from PDB entry 1CSL)

J.A.IPPOLITO T.A.STEITZ THE STRUCTURE OF THE HIV-1 RRE HIGH AFFINITY REV BINDING SITE AT 1.6 A RESOLUTION J.MOL.BIOL. V. 295 711 2000

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1CSL j2 A-G47 B-G71 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 160°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.34902Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGGGCG 6nt

Strand 2: Chain B: CGGUACG 7nt

Valid XHTML 1.0 Transitional