RNAJunction Database - Junction Profile:166
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 166: 1DQF_j2_A-C3_B-U15

Primary Citation: (from PDB entry 1DQF)

Y.XIONG M.SUNDARALINGAM TWO CRYSTAL FORMS OF HELIX II OF XENOPUS LAEVIS 5S RRNA WITH A CYTOSINE BULGE RNA V. 6 1316 2000

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1DQF j2 A-C3 B-U15 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 173°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.56814Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCCACC 6nt

Strand 2: Chain B: GGUCGGC 7nt

Valid XHTML 1.0 Transitional